The Genome of the Sea Urchin Strongylocentrotus purpuratus
نویسنده
چکیده
References and Notes 1. C. Harrold, J. S. Pearse, Echinoderm Studies 2, 137 (1987). 2. L. Rogers-Bennett, in Edible Sea Urchins: Biology and Ecology, J. M. Lawrence, Ed. (Elsevier, Amsterdam, Netherlands, 2007), pp. 393–425. 3. P. K. Dayton et al., Ecol. Monogr. 62, 421 (1992). 4. A. W. Ebeling et al., Mar. Biol. 84, 287 (1985). 5. K. D. Lafferty, Ecol. Appl. 14, 1566 (2004). 6. J. S. Pearse, A. H. Hines, Mar. Ecol. Prog. Ser. 39, 275 (1987). 7. J. M. Watanabe, C. Harrold, Mar. Ecol. Prog. Ser. 71, 125 (1991). 8. T. A. Ebert et al., Mar. Ecol. Prog. Ser. 111, 41 (1994). 9. J. B. Jackson et al., Science 293, 629 (2001). 10. P. K. Dayton et al., Ecol. Appl. 8, 309 (1998). 11. J. A. Estes, D. O. Duggins, Ecol. Monogr. 65, 75 (1995). 12. M. H. Graham, Ecosystems 7, 341 (2004). 13. M. S. Foster, Hydrobiologia 192, 21 (1990). 14. M. J. Tegner, P. K. Dayton, ICES J. Mar. Sci. 57, 579 (2000). 15. L. Rogers-Bennett, J. S. Pearse, Conserv. Biol. 15, 642 (2001). 16. D. Sweetnam et al., Calif. Coop. Oceanic Fish. Invest. Rep. 46, 10 (2005). 17. T. A. Ebert, J. R. Southon, Fish. Bull. 101, 915 (2003). 18. I thank J. Watanabe for providing the photo used in Fig. 1, L. Rogers-Bennett for sharing her manuscript with me, V. Pearse and an anonymous reviewer for providing comments on the manuscript, and R. A. Cameron for inviting me to prepare it.
منابع مشابه
Methods for karyotyping and for localization of developmentally relevant genes on the chromosomes of the purple sea urchin, Strongylocentrotus purpuratus.
The purple sea urchin, Strongylocentrotus purpuratus, is the only non-chordate deuterostome model with a fully sequenced genome. Chromosomal localization of individual genes and resulting gene maps are unavailable for this or for any sea urchin. As a result, the purple sea urchin genome has not been mapped onto specific chromosomes and remains inaccessible to genome-wide approaches addressing q...
متن کاملDraft Genome Sequence of Vibrio fortis Dalian14 Isolated from Diseased Sea Urchin (Strongylocentrotus intermedius)
Here, we report the draft genome sequence of Vibrio fortis Dalian14 isolated from diseased sea urchin (Strongylocentrotus intermedius) during disease outbreaks in North China. The availability of this genome sequence will facilitate the study of the mechanisms of pathogenicity and evolution of Vibrio species.
متن کاملThe sea urchin genome as a window on function.
The emphasis on the sequencing of genomes seems to make this task an end in itself. However, genome sequences and the genes that are predicted from them are really an opportunity to examine the biological function of the organism constructed by that genome. This point is illustrated here by examples in which the newly annotated gene complement reveals surprises about the way Strongylocentrotus ...
متن کاملSpBase: the sea urchin genome database and web site
SpBase is a system of databases focused on the genomic information from sea urchins and related echinoderms. It is exposed to the public through a web site served with open source software (http://spbase.org/). The enterprise was undertaken to provide an easily used collection of information to directly support experimental work on these useful research models in cell and developmental biology....
متن کاملGene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis.
A comprehensive transcriptome analysis has been performed on protein-coding RNAs of Strongylocentrotus purpuratus, including 10 different embryonic stages, six feeding larval and metamorphosed juvenile stages, and six adult tissues. In this study, we pooled the transcriptomes from all of these sources and focused on the insights they provide for gene structure in the genome of this recently seq...
متن کاملA genome-wide survey of the evolutionarily conserved Wnt pathways in the sea urchin Strongylocentrotus purpuratus.
The Wnt pathways are evolutionarily well-conserved signal transduction pathways that are known to play important roles in all Metazoans investigated to date. Here, we examine the Wnt pathway genes and target genes present in the genome of the echinoderm Strongylocentrotus purpuratus. Analysis of the Wnt genes revealed that eleven of the thirteen reported Wnt subfamilies are represented in sea u...
متن کامل